How do I upload to a MySQL database?

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An option to consider for MySQL is installing a web interface, like phpMyAdmin. This would enable you to directly access the MySQL and upload a database. It is packaged by Debian and would take an hour or two to set up (it comes with Apache configuration and would need some work to make it work with php-fpm / Nginx in a secure manner, by default it is set to access MySQL on the local machine and not a remote one).